daligner

local alignment discovery between long nucleotide sequencing reads

Description

These tools permit one to find all significant local alignments between reads encoded in a Dazzler database. The assumption is that the reads are from a Pacific Biosciences RS II long read sequencer. That is, the reads are long and noisy, up to 15% on average.

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Homepage

https://dazzlerblog.wordpress.com

Install this software package

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Install daligner