twopaco

build the compacted de Bruijn graph from many complete genomes

Description

TwoPaCo is an implementation of the algorithm described in the paper "TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes".

This package contains two programs:

twopaco: tool for direct construction of the compressed graph from

multiple complete genomes

graphdump: utility that turns output of twopaco into a text format

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Homepage

https://github.com/medvedevgroup/TwoPaCo

Install this software package

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Install twopaco