Tokyo Cabinet is an efficient database library like GDBM and NDBM. It features hash database and B+ tree database and is developed as the successor of QDBM, for the purpose of the following three points: higher processing speed, smaller size of a database file, and simpler API.

Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

msolve is an open source C library implementing computer algebra algorithms for solving polynomial systems (with rational coefficients or coefficients in a prime field).

tpm-tools is a group of tools to manage and utilize the Trusted Computing Group's TPM hardware. TPM hardware can create, store and use RSA keys securely (without ever being exposed in memory), verify a platform's software state using cryptographic hashes and more.

TPM2.0 TSS (Software Stack) consists of API layers provided to support TPM 2.0 chips. It is made out of three layers: