Fishpond contains methods for differential transcript and gene expression analysis of RNA-seq data using inferential replicates for uncertainty of abundance quantification, as generated by Gibbs sampling or bootstrap sampling. Also the package contains utilities for working with Salmon and Alevin quantification files.

Provides estimators of the mode of univariate data or univariate distributions.

ORFEO Toolbox (OTB) is distributed as an open source library of image processing algorithms. OTB is based on the medical image processing library ITK and offers particular functionalities for remote sensing image processing in general and for high spatial resolution images in particular.

OATH Toolkit provide components to build one-time password authentication systems. It contains shared C libraries, command line tools and a PAM module. Supported technologies include the event-based HOTP algorithm (RFC 4226), the time-based TOTP algorithm (RFC 6238), and Portable Symmetric Key Container (PSKC, RFC 6030) to manage secret key data. OATH stands for Open AuTHentication, which is the organization that specify the algorithms.

MALT, an acronym for MEGAN alignment tool, is a sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics. It is an extension of MEGAN6, the MEGenome Analyzer and is designed to provide the input for MEGAN6, but can also be used independently of MEGAN6.

Object::Pad::FieldAttr::Final provides a third-party field attribute for Object::Pad-based classes, which declares that the field it is attached to shall be set as read-only when the constructor returns, disallowing further modification to it.