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haskell-what4-utils
Solver-agnostic symbolic values support for issuing queries
What4 is a generic library for representing values as symbolic formulae which
may contain references to symbolic values, representing unknown variables.
It provides support for communicating with a variety of SAT and SMT solvers,
including Z3, CVC4, CVC5, Yices, Boolector, STP, and dReal.
The data representation types make heavy use of GADT-style type indices
to ensure type-correct manipulation of symbolic values.
libparted2t64
disk partition manipulator - shared library
GNU Parted is a program that allows you to create, destroy, resize,
move, and copy disk partitions. This is useful for creating space
for new operating systems, reorganizing disk usage, and copying data
to new hard disks.
openjdk-21-jdk
OpenJDK Development Kit (JDK)
OpenJDK is a development environment for building applications,
applets, and components using the Java programming language.
openjdk-21-jdk-headless
OpenJDK Development Kit (JDK) (headless)
OpenJDK is a development environment for building applications,
applets, and components using the Java programming language.
python3-pdb2pqr
Preparation of protein structures for electrostatics calculations
PDB2PQR is a Python software package that automates many of the common
tasks of preparing structures for continuum electrostatics calculations.
It thus provides a platform-independent utility for converting protein files
in PDB format to PQR format. These tasks include:
* Adding a limited number of missing heavy atoms to biomolecular structures
* Determining side-chain pKas
* Placing missing hydrogens
* Optimizing the protein for favorable hydrogen bonding
* Assigning charge and radius parameters from a variety of force fields