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libcctbx0
Computational Crystallography Toolbox - runtime libraries
Computational Crystallography Toolbox contains following modules:
- annlib_adaptbx:
- boost_adaptbx: wrappers for Boost functionality in CCTBX
- cbflib_adaptbx:
- ccp4io_adaptbx:
- cctbx: Libraries for general crystallographic applications,
useful for both small-molecule and macro-molecular
crystallography.
- cma_es:
- crys3d: Modules for the display of molecules, electron density,
and reciprocal space data.
- dxtbx: The Diffraction Image Toolbox, a library for handling
X-ray detector data of arbitrary complexity from a variety
of standard formats.
- fable: Fortran EMulation library for porting Fortran77 to C++.
- gltbx: Python bindings for OpenGL
- iotbx: Working with common crystallographic file formats.
- libtbx: The build system common to all other modules. This includes
a very thin wrapper around the SCons software construction tool.
It also contains many useful frameworks and utilities to simplify
application development, including tools for regression testing,
parallelization across multiprocessor systems and managed clusters,
and a flexible, modular configuration syntax called PHIL
(Python Hierarchial Interface Language) used throughout the CCTBX.
- mmtbx: Functionality specific to macromolecular crystallography.
This includes all of the machinery required for setup of
geometry restraints, bulk solvent correction and scaling,
analysis of macromolecular diffraction data, calculation of
weighted map coefficients, and most of the methods implemented
in phenix.refine. The majority of infrastructure for the MolProbity
validation server (and Phenix equivalent) is also located here.
- omptbx: OpenMP interface.
- rstbx: A reciprocal space toolbox to autoindex small molecule Bragg
diffraction, given the reciprocal space vectors.
- scitbx: General scientific calculations. his includes a family of
high-level C++ array types, a fast Fourier transform library,
and a C++ port of the popular L-BFGS quasi-Newton minimizer.
- smtbx: Small-Molecule crystallography.
- spotfinder:
- tbxx:
- wxtbx: wxPython controls used in the Phenix GUI and various
utilities
libqjdns-qt5-2t64
Simple DNS queries library - Qt5 wrapper
For Qt5 users there is a wrapper available called QJDns and a very
high-level wrapper called QJDnsShared (under its original name
JDnsShared).
libgmsh4.12
Three-dimensional finite element mesh generator shared library
Gmsh is a 3D finite element grid generator with a build-in CAD engine
and post-processor. Its design goal is to provide a fast, light and
user-friendly meshing tool with parametric input and advanced
visualization capabilities. Gmsh is built around four modules: geometry,
mesh, solver and post-processing. The specification of any input to
these modules is done either interactively using the graphical user
interface or in ASCII text files using Gmsh's own scripting language.
libimath-3-1-29t64
Utility libraries from ASF used by OpenEXR - runtime
Imath is a basic, light-weight, and efficient C++ representation of
2D and 3D vectors and matrices and other simple but useful
mathematical objects, functions, and data types common in computer
graphics applications, including the “half” 16-bit floating-point type.
libjodycode3t64
shared lib for programs written by Jody Bruchon (runtime)
libjodycode is a software code library containing code shared among several
of the programs written by Jody Bruchon such as imagepile, jdupes, winregfs,
and zeromerge. These shared pieces of code were copied between each program
as they were updated. As the number of programs increased and keeping these
pieces of code synced became more annoying, the decision was made to combine
all of them into a single reusable shared library.
openjdk-23-jre
OpenJDK Java runtime, using Hotspot JIT
Full Java runtime environment - needed for executing Java GUI and Webstart
programs, using Hotspot Zero.