Plymouth provides a boot-time I/O multiplexing framework - the most obvious use for which is to provide an attractive graphical animation in place of the text messages that normally get shown during boot. (The messages are instead redirected to a logfile for later viewing.) However, in event-driven boot systems Plymouth can also usefully handle user interaction such as password prompts for encrypted file systems.

This package contains batctl, which serves as configuration utility, monitoring and debugging application. It allows one to modify the module parameters, reading the logfiles and tables, decapsulate embedded packets on the fly, traceroute to and ping mac addresses, generate sequence number graphs for the Layer 2 Mesh B.A.T.M.A.N.

This package includes the Eclipse Equinox OSGi framework, which can be used outside Eclipse. Equinox is an implementation of the OSGi core framework specification, a set of bundles that implement various optional OSGi services and other infrastructure for running OSGi-based systems. The Equinox OSGi core framework implementation is used as the reference implementation and as such it implements all the required features of the latest OSGi core framework specification.

BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads.

The FFTW library computes Fast Fourier Transforms (FFT) in one or more dimensions. It is extremely fast. This package contains the shared library for double precision transforms.