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compute the melting temperature of nucleic acid duplex

melting

compute the melting temperature of nucleic acid duplex

This program computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions. Three types of hybridisation are possible: DNA/DNA, DNA/RNA, and RNA/RNA. The program first computes the hybridisation enthalpy and entropy from the elementary parameters of each Crick's pair by the nearest-neighbor method. Then the melting temperature is computed. The set of thermodynamic parameters can be easily changed, for instance following an experimental breakthrough.
WebDAV server implementation in Python (Python2)

python-webdav

WebDAV server implementation in Python (Python2)

PyWebDAV is a WebDAV server implementation in Python. It's aim is to provide a simple interface to webdav services to any application which needs it. It can be run as a daemon.
Computational Logic for Applicative Common Lisp: emacs interface

acl2-emacs

Computational Logic for Applicative Common Lisp: emacs interface

ACL2 is both a programming language in which you can model computer systems and a tool to help you prove properties of those models.
dark GTK2/GTK3/Metacity theme

darkmint-gtk-theme

dark GTK2/GTK3/Metacity theme

A night-style window theme by OriginalSeed. It is mostly black, with dark greenish elements. Comes with a minty flavour; if you prefer colds over mints you might want DarkCold instead.
passive checker of Python 2 programs

pyflakes

passive checker of Python 2 programs

Pyflakes is program to analyze Python programs and detect various errors. It works by parsing the source file, not importing it, so it is safe to use on modules with side effects. It's also much faster.
Network Performance Meter (measurement program)

netperfmeter

Network Performance Meter (measurement program)

NetPerfMeter is a network performance meter for the UDP, TCP, MPTCP, SCTP and DCCP transport protocols over IPv4 and IPv6. It simultaneously transmits bidirectional flows to an endpoint and measures the resulting flow bandwidths and QoS. The results are written as vector and scalar files. The vector files can e.g. be used to create plots of the results.