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medical image reconstruction and registration

plastimatch

medical image reconstruction and registration

Plastimatch is an open source software for deformable image registration. It is designed for high-performance volumetric registration of medical images, such as X-ray computed tomography (CT), magnetic resonance imaging (MRI), and positron emission tomography(PET). Software features include: * B-spline method for deformable image registration (GPU and multicore accelerated), including support for image masking, landmark penalties, and regularization * Demons method for deformable image registration (GPU accelerated) * Multi-atlas segmentation * ITK-based algorithms for translation, rigid, affine, multiple demons methods, and B-spline registration * Pipelined, multi-stage registration framework with seamless conversion between most algorithms and transform types * Landmark-based deformable registration using thinplate splines for global registration * Landmark-based deformable registration using radial basis functions for local corrections * Broad support for 3D image file formats (using ITK), including DICOM, Nifti, NRRD, MetaImage, and Analyze * Extensive toolchain for radiotherapy research, including support for DICOM, DICOM-RT, DICOM SRO, XiO file format, gamma analysis, contour manipulation, contour overlap analysis, and vector field analysis Plastimatch also features two handy utilities which are not directly related to image registration: * FDK cone-beam CT reconstruction (GPU and multicore accelerated) * Digitally reconstructed radiograph (DRR) generation (GPU and multicore accelerated)
programs for counting physical source lines of code (SLOC)

sloccount

programs for counting physical source lines of code (SLOC)

SLOCCount (pronounced "sloc-count") is a suite of programs for counting physical source lines of code (SLOC) in potentially large software systems (thus, SLOCCount is a "software metrics tool" or "software measurement tool"). SLOCCount can count physical SLOC for a wide number of languages; listed alphabetically, they are: Ada, Assembly, awk, Bourne shell, C, C++, C shell, COBOL, C#, Erlang, Expect, Fortran, Java, lex/flex, LISP (including Scheme), Makefile, Modula3, Objective-C, Pascal, Perl, PHP, Python, Ruby, sed, SQL, Tcl, VHDL, XML, Yacc/Bison.
Terminal interaction recorder and player (for tty)

ttyrec

Terminal interaction recorder and player (for tty)

This package includes "ttyrec", a tty recorder which records terminal interaction, and "ttyplay", the player to see that intereaction.
Report Magic for Analog

rmagic

Report Magic for Analog

With Report Magic for Analog, anyone can create great looking website statistics reports. Report Magic for Analog uses the Computer Readable Output format created by Analog, the most popular logfile analyser in the world. Using this and some simple settings you provide, Report Magic formats beautiful reports with tables, descriptions and graphs.
transitional dummy package to migrate from pdksh to mksh

pdksh

transitional dummy package to migrate from pdksh to mksh

Gameboy sound player

gbsplay

Gameboy sound player

This program emulates the sound hardware of the Nintendo Gameboy. It is able to play the sounds from a Gameboy module dump (.GBS format). Also included is the gbsinfo tool which displays information about a .GBS file.