PRANK is a probabilistic multiple alignment program for DNA, codon and amino-acid sequences. It's based on a novel algorithm that treats insertions correctly and avoids over-estimation of the number of deletion events. In addition, PRANK borrows ideas from maximum likelihood methods used in phylogenetics and correctly takes into account the evolutionary distances between sequences. Lastly, PRANK allows for defining a potential structure for sequences to be aligned and then, simultaneously with the alignment, predicts the locations of structural units in the sequences.

Files are selected by typing characters that appear in their paths, and are ordered by an algorithm which knows that characters that appear in certain locations (for example, immediately after a path separator) should be given more weight.

This is a transitional dummy package. It can safely be removed. ptop is replaced by pgtop

Try to determine which same picture was saved at a higher quality, even if the picture was saved at low quality and later at a higher quality.

pipemeter can be inserted in a shell command between two programs passing data via pipe, or between a file and a program reading from stdin, and show the speed and amount of data that has passed through. If reading from a regular file, or passed a size, a progress meter is also shown.