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python3-freesasa

Python bindings for FreeSASA (Python 3)

The module provides Python bindings for the FreeSASA library. FreeSASA calculates Solvent Accessible Surface Area (SASA) of biomolecules. By default, Lee & Richards' algorithm is used, but Shrake & Rupley's is also available. Both can be parameterized to arbitrary precision, and for high resolution versions of the algorithms, the calculations give identical results.

librasqal3t64

Rasqal RDF query library

Rasqal is a C library providing support for querying the Resource Description Framework (RDF) including parsing query syntaxes, constructing the queries, executing them, returning result bindings and formatting results. It supports the SPARQL RDF Query Language, RDF Data Query Language (RDQL) and LAQRS experimental query language extending SPARQL.

python3-easysnmp

Pythonic SNMP library based on Net-SNMP (Python 3)

Easy SNMP is a fork of Net-SNMP Python Bindings that attempts to bring a more Pythonic interface to the library. This module provides a full-featured SNMP client API and supports all dialects of the SNMP protocol.

python3-expandvars

bash-style environment variable expansion in Python

This module is inspired by GNU bash's variable expansion features. It can be used as an alternative to Python's os.path.expandvars function.

elpa-snakemake

Run Snakemake workflows from Emacs

This package provides a Transient interface for calling Snakemake. The main entry point is the `snakemake' command, which you should consider giving a global key binding.

libgatk-fermilite-java

interface to call Heng Li's fermi-lite assembler from Java code

Fml-asm (fermi-lite assembler) is a command-line tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size, based on the fermi-lite library.